Mus musculus Gene: Tnrc6b
Summary
InnateDB Gene IDBG-163941.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Tnrc6b
Gene Name trinucleotide repeat containing 6b
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000047888
Encoded Proteins
trinucleotide repeat containing 6b
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000100354:
Gene Information
Type Protein coding
Genomic Location Chromosome 15:80711319-80941086
Strand Forward strand
Band E1
Transcripts
ENSMUST00000067689 ENSMUSP00000064336
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 26 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 26 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006417 regulation of translation
GO:0031047 gene silencing by RNA
GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Cellular Component
GO:0000932 cytoplasmic mRNA processing body
GO:0005575 cellular_component
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
SSD Ortholog
Ortholog supports species divergence
Not yet available
SSD Ortholog
Ortholog supports species divergence
Pathways
NETPATH
REACTOME
Post-transcriptional silencing by small RNAs pathway
Gene Expression pathway
Regulatory RNA pathways pathway
KEGG
INOH
PID BIOCARTA
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
Signaling by FGFR in disease pathway
Cellular responses to stress pathway
Oncogene Induced Senescence pathway
Signalling by NGF pathway
Signaling by EGFR in Cancer pathway
PI3K/AKT activation pathway
Downstream signaling of activated FGFR pathway
Ca2+ pathway pathway
Pre-NOTCH Expression and Processing pathway
beta-catenin independent WNT signaling pathway
PI-3K cascade pathway
PI3K events in ERBB2 signaling pathway
DAP12 signaling pathway
Signaling by Wnt pathway
Signaling by EGFR pathway
Role of LAT2/NTAL/LAB on calcium mobilization pathway
Innate Immune System pathway
Signaling by ERBB4 pathway
Signaling by SCF-KIT pathway
Post-transcriptional silencing by small RNAs pathway
Fc epsilon receptor (FCERI) signaling pathway
Signal Transduction pathway
Pre-NOTCH Transcription and Translation pathway
Adaptive Immune System pathway
Immune System pathway
Downstream signal transduction pathway
Cellular Senescence pathway
NGF signalling via TRKA from the plasma membrane pathway
Signaling by NOTCH pathway
PI3K/AKT Signaling in Cancer pathway
Signaling by FGFR pathway
PIP3 activates AKT signaling pathway
Signaling by PDGF pathway
Signaling by ERBB2 pathway
Signaling by the B Cell Receptor (BCR) pathway
GAB1 signalosome pathway
Oxidative Stress Induced Senescence pathway
Downstream signaling events of B Cell Receptor (BCR) pathway
Gene Expression pathway
Disease pathway
PI3K events in ERBB4 signaling pathway
DAP12 interactions pathway
Regulatory RNA pathways pathway
KEGG
INOH
PID BIOCARTA
PID NCI
Cross-References
SwissProt Q8BKI2
TrEMBL Q3TRK2 Q8BWL0 Q8BX83 Q8VD67
UniProt Splice Variant
Entrez Gene 213988
UniGene Mm.131328 Mm.409295 Mm.410045 Mm.412092
RefSeq NM_144812 NM_177124
OMIM
CCDS CCDS37146
HPRD
IMGT
MGI ID MGI:2443730
MGI Symbol Tnrc6b
EMBL AC125540 AC126682 AK048628 AK051174 AK051922 AK052247 AK122440 AK162702 BC017531
GenPept AAH17531 BAC33400 BAC34545 BAC34813 BAC34897 BAC65722 BAE37027
RNA Seq Atlas 213988