Version 5.4
Mus musculus Gene: Rnf138
Summary
InnateDB Gene IDBG-130545.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rnf138
Gene Name ring finger protein 138
Synonyms 2410015A17Rik; 2810480D20Rik; STRIN; Trif; Trif-d
Species Mus musculus
Ensembl Gene ENSMUSG00000024317
Encoded Proteins
IDBP-130547
ring finger protein 138
IDBP-130549
ring finger protein 138
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000134758:
The protein encoded by this gene contains a RING finger, a motif present in a variety of functionally distinct proteins and known to be involved in protein-DNA and protein-protein interactions. Alternatively spliced transcript variants encoding distinct isoforms have been observed. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 18:21001341-21028223
Strand Forward strand
Band A2
Transcripts
ENSMUST00000052396 ENSMUSP00000056641
ENSMUST00000072847 ENSMUSP00000072626
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
They are also associated with 12 interaction(s) predicted by orthology.
Experimentally validated
Total 4 [view]
Protein-Protein 4 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 12 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016874 ligase activity
GO:0019901 protein kinase binding
GO:0046872 metal ion binding
Biological Process
GO:0008150 biological_process
GO:0016055 Wnt signaling pathway
GO:0016567 protein ubiquitination
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000134758
View Gene Order
ENSBTAG00000020160
Not yet available
Pathways
NETPATH
REACTOME
REACT_236645
Class I MHC mediated antigen processing & presentation pathway
REACT_230745
Immune System pathway
REACT_199115
Antigen processing: Ubiquitination & Proteasome degradation pathway
REACT_229531
Adaptive Immune System pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_75842
Antigen processing: Ubiquitination & Proteasome degradation pathway
REACT_75774
Adaptive Immune System pathway
REACT_6900
Immune System pathway
REACT_75820
Class I MHC mediated antigen processing & presentation pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q9CQE0
TrEMBL
UniProt Splice Variant
Entrez Gene 56515
UniGene Mm.253542 Mm.396460 Mm.405564 Mm.489970
RefSeq NM_019706 NM_207623
OMIM
CCDS CCDS29089 CCDS29090
HPRD
IMGT
MGI ID MGI:1929211
MGI Symbol Rnf138
EMBL AB025010 AB025011 AK004238 AK010486 AK136138 BC003712
GenPept AAH03712 BAA76376 BAA76377 BAB23232 BAB26977 BAE22840
RNA Seq Atlas 56515

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca