InnateDB Protein
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IDBP-7059.6
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Last Modified
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2014-10-13 [Report errors or provide feedback]
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Gene Symbol
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RTF1
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Protein Name
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Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
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Synonyms
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GTL7; KIAA0252;
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Species
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Homo sapiens
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Ensembl Protein
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ENSP00000374280
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InnateDB Gene
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IDBG-7053 (RTF1)
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Protein Structure
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Function |
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non- phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of KMT2A/MLL1; it promotes leukemogenesis through association with KMT2A/MLL1-rearranged oncoproteins, such as KMT2A/MLL1-MLLT3/AF9 and KMT2A/MLL1-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Binds single-stranded DNA. Required for maximal induction of heat-shock genes. Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of a SET1 complex (By similarity). {ECO:0000250}.
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Subcellular Localization |
Nucleus, nucleoplasm {ECO:0000250}.
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Disease Associations |
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Tissue Specificity |
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Comments |
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Number of Interactions
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This gene and/or its encoded proteins are associated with 37 experimentally validated interaction(s) in this database.
Experimentally validated |
Total |
37
[view]
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Protein-Protein |
34
[view]
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Protein-DNA |
3
[view]
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Protein-RNA |
0
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DNA-DNA |
0
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RNA-RNA |
0
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DNA-RNA |
0
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Molecular Function |
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Biological Process |
GO:0000122
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negative regulation of transcription from RNA polymerase II promoter
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GO:0001711
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endodermal cell fate commitment
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GO:0006352
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DNA-templated transcription, initiation
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GO:0016055
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Wnt signaling pathway
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GO:0016570
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histone modification
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GO:0019827
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stem cell maintenance
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GO:0032968
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positive regulation of transcription elongation from RNA polymerase II promoter
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GO:0045944
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positive regulation of transcription from RNA polymerase II promoter
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GO:0051571
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positive regulation of histone H3-K4 methylation
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GO:0080182
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histone H3-K4 trimethylation
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Cellular Component |
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PDB ID |
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InterPro |
IPR004343
Plus-3
IPR018144
Plus-3 domain, subgroup
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PFAM |
PF03126
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PRINTS |
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PIRSF |
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SMART |
SM00719
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TIGRFAMs |
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Modification |
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SwissProt |
Q92541
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PhosphoSite |
PhosphoSite-Q92541
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TrEMBL |
I7GPQ7
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UniProt Splice Variant |
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Entrez Gene |
23168
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UniGene |
Hs.511096
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RefSeq |
NP_055953
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HUGO |
HGNC:28996
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OMIM |
611633
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CCDS |
CCDS32200
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HPRD |
11071
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IMGT |
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EMBL |
AC087721
AK292302
BC015052
D87440
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GenPept |
AAH15052
BAA13382
BAF84991
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