InnateDB: Systems Biology of the Innate Immune Response

Homo sapiens Gene: SCFD1

Summary

InnateDB Gene

IDBG-4265.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

SCFD1

Gene Name

sec1 family domain containing 1

Synonyms

C14orf163; RA410; SLY1; SLY1P; STXBP1L2

Species

Homo sapiens

Ensembl Gene

ENSG00000092108

Encoded Proteins

IDBP-4267

sec1 family domain containing 1

IDBP-237046

sec1 family domain containing 1

IDBP-364980

sec1 family domain containing 1

IDBP-587354

sec1 family domain containing 1

IDBP-590676

sec1 family domain containing 1

IDBP-598668

sec1 family domain containing 1

IDBP-586070

sec1 family domain containing 1

IDBP-590217

sec1 family domain containing 1

IDBP-595039

sec1 family domain containing 1

IDBP-594203

sec1 family domain containing 1

IDBP-597212

sec1 family domain containing 1

IDBP-596455

sec1 family domain containing 1

IDBP-587744

sec1 family domain containing 1

IDBP-599849

sec1 family domain containing 1

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.

Gene Information

Type

Protein coding

Genomic Location

Chromosome 14:30622112-30735812

Strand

Forward strand

Band

q12

Transcripts

ENST00000311943	ENSP00000309417
ENST00000396629	ENSP00000379870
ENST00000458591	ENSP00000390783
ENST00000463622	ENSP00000451298
ENST00000484733	ENSP00000452178
ENST00000469043	ENSP00000452448
ENST00000555259	ENSP00000452323
ENST00000544052	ENSP00000443010
ENST00000556768	ENSP00000451811
ENST00000557713	ENSP00000451064
ENST00000557076	ENSP00000450755
ENST00000553693	ENSP00000452308
ENST00000556413
ENST00000554776	ENSP00000452046
ENST00000556534
ENST00000554819
ENST00000553278
ENST00000555953
ENST00000554486
ENST00000554437	ENSP00000450546
ENST00000556486
ENST00000556256
ENST00000555550
ENST00000553280

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 42 experimentally validated interaction(s) in this database.

Experimentally validated
Total	42 [view]
Protein-Protein	41 [view]
Protein-DNA	1 [view]
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Gene Ontology

Molecular Function

Accession	GO Term
GO:0005515	protein binding
GO:0019905	syntaxin binding
GO:0047485	protein N-terminus binding

Biological Process

GO:0001666	response to hypoxia
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER
GO:0006892	post-Golgi vesicle-mediated transport
GO:0006904	vesicle docking involved in exocytosis
GO:0009636	response to toxic substance
GO:0015031	protein transport
GO:0016192	vesicle-mediated transport
GO:0060628	regulation of ER to Golgi vesicle-mediated transport

Cellular Component

GO:0005789	endoplasmic reticulum membrane
GO:0005798	Golgi-associated vesicle
GO:0005801	cis-Golgi network
GO:0005886	plasma membrane
GO:0017119	Golgi transport complex
GO:0032580	Golgi cisterna membrane

Orthologs

Species

Mus musculus

Bos taurus

Gene ID

Gene Order

ENSMUSG00000020952

View Gene Order

ENSBTAG00000017565

Not yet available

Cross-References

SwissProt

Q8WVM8

TrEMBL

B7Z5N7 G3V5E2

UniProt Splice Variant

Entrez Gene

23256

UniGene

Hs.369168

RefSeq

NM_182835 NM_001257376 NM_001283031 NM_001283032 NM_001283033 NM_016106 XM_005267469

HUGO

HGNC:20726

OMIM

CCDS

CCDS45092 CCDS58308 CCDS9639

HPRD

10210

IMGT

EMBL

AB020724 AF067205 AF086916 AF092139 AF110646 AF319958 AK290410 AK297873 AK298622 AK299222 AK316212 AL121852 BC017734 CH471078

GenPept

AAC17907 AAD40381 AAD48586 AAG50273 AAH17734 AAP97146 BAA74940 BAF83099 BAH12683 BAH12830 BAH12973 BAH14583 EAW65968

RNA Seq Atlas

23256