Version 5.4
Homo sapiens Gene: YTHDC1
Summary
InnateDB Gene IDBG-21314.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol YTHDC1
Gene Name YTH domain containing 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000083896
Encoded Proteins
IDBP-21316
YTH domain containing 1
IDBP-21320
YTH domain containing 1
IDBP-713105
IDBP-712973
IDBP-712642
IDBP-713301
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 4:68310387-68350089
Strand Reverse strand
Band q13.2
Transcripts
ENST00000355665 ENSP00000347888
ENST00000344157 ENSP00000339245
ENST00000507529 ENSP00000461990
ENST00000506175
ENST00000505251 ENSP00000462238
ENST00000510746 ENSP00000462186
ENST00000579690 ENSP00000463982
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 44 experimentally validated interaction(s) in this database.
Experimentally validated
Total 44 [view]
Protein-Protein 44 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006376 mRNA splice site selection
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016604 nuclear body
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000035851
View Gene Order
ENSBTAG00000015572
Not yet available
Cross-References
SwissProt Q96MU7
TrEMBL J3KS01 J3QR07
UniProt Splice Variant
Entrez Gene 91746
UniGene Hs.605625
RefSeq NM_001031732 NM_133370 XM_005265706 XM_005265707 XM_005275637 XM_005275638
HUGO HGNC:30626
OMIM
CCDS CCDS33992 CCDS3522
HPRD
IMGT
EMBL AB075846 AC074378 AK056430 BC041119 BC053863
GenPept AAH41119 AAH53863 AAY41024 BAB71181 BAB85552
RNA Seq Atlas 91746

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca