Version 5.4
Homo sapiens Gene: KDM4B
Summary
InnateDB Gene IDBG-19711.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol KDM4B
Gene Name lysine (K)-specific demethylase 4B
Synonyms JMJD2B; TDRD14B
Species Homo sapiens
Ensembl Gene ENSG00000127663
Encoded Proteins
IDBP-19713
lysine (K)-specific demethylase 4B
IDBP-19715
lysine (K)-specific demethylase 4B
IDBP-601161
lysine (K)-specific demethylase 4B
IDBP-766143
IDBP-765998
IDBP-811861
lysine (K)-specific demethylase 4B
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 19:4969113-5153595
Strand Forward strand
Band p13.3
Transcripts
ENST00000159111 ENSP00000159111
ENST00000381759 ENSP00000371178
ENST00000536461 ENSP00000440495
ENST00000592159
ENST00000589104
ENST00000588337 ENSP00000468514
ENST00000588166
ENST00000588961
ENST00000588361 ENSP00000467678
ENST00000592175
ENST00000624683
ENST00000611640 ENSP00000480642
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 20 experimentally validated interaction(s) in this database.
They are also associated with 6 interaction(s) predicted by orthology.
Experimentally validated
Total 20 [view]
Protein-Protein 20 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 6 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0016568 chromatin modification
GO:0055114 oxidation-reduction process
Cellular Component
GO:0005634 nucleus
GO:0005925 focal adhesion
GO:0030054 cell junction
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000024201
View Gene Order
ENSBTAG00000015487
Not yet available
Pathways
NETPATH
REACTOME
REACT_228178
HDMs demethylate histones pathway
REACT_172623
Chromatin organization pathway
REACT_172633
Chromatin modifying enzymes pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.654816 Hs.729528 Hs.735448
RefSeq NM_015015 XM_005259521 XM_005259522
HUGO
OMIM
CCDS CCDS12138
HPRD 11056
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca