InnateDB: Systems Biology of the Innate Immune Response

Homo sapiens Gene: CSDA

Summary

InnateDB Gene

IDBG-19292.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

CSDA

Gene Name

cold shock domain protein A

Synonyms

CSDA; CSDA1; DBPA; ZONAB

Species

Homo sapiens

Ensembl Gene

ENSG00000060138

Encoded Proteins

IDBP-19294

cold shock domain protein A

IDBP-19296

cold shock domain protein A

IDBP-598083

cold shock domain protein A

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.

Gene Information

Type

Protein coding

Genomic Location

Chromosome 12:10699089-10723312

Strand

Reverse strand

Band

p13.2

Transcripts

ENST00000228251	ENSP00000228251
ENST00000279550	ENSP00000279550
ENST00000366290
ENST00000366286
ENST00000540447
ENST00000540975
ENST00000546164
ENST00000536823
ENST00000542002
ENST00000542641
ENST00000541351	ENSP00000441447
ENST00000544504
ENST00000539204
ENST00000544622
ENST00000546298
ENST00000544501
ENST00000536107
ENST00000540747

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 80 experimentally validated interaction(s) in this database.
They are also associated with 8 interaction(s) predicted by orthology.

Experimentally validated
Total	80 [view]
Protein-Protein	75 [view]
Protein-DNA	5 [view]
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	8 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227	RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003676	nucleic acid binding
GO:0003677	DNA binding
GO:0003690	double-stranded DNA binding
GO:0003697	single-stranded DNA binding
GO:0003700	sequence-specific DNA binding transcription factor activity
GO:0003714	transcription corepressor activity
GO:0003730	mRNA 3'-UTR binding
GO:0005515	protein binding
GO:0017048	Rho GTPase binding
GO:0044822	poly(A) RNA binding

Biological Process

GO:0000122	negative regulation of transcription from RNA polymerase II promoter
GO:0001701	in utero embryonic development
GO:0006351	transcription, DNA-templated
GO:0006355	regulation of transcription, DNA-templated
GO:0007283	spermatogenesis
GO:0008584	male gonad development
GO:0009409	response to cold
GO:0009566	fertilization
GO:0043066	negative regulation of apoptotic process
GO:0046622	positive regulation of organ growth
GO:0048642	negative regulation of skeletal muscle tissue development
GO:0060546	negative regulation of necroptotic process
GO:0070935	3'-UTR-mediated mRNA stabilization
GO:0071356	cellular response to tumor necrosis factor
GO:0071474	cellular hyperosmotic response
GO:1902219	negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress
GO:2000767	positive regulation of cytoplasmic translation

Cellular Component

GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005844	polysome
GO:0005923	tight junction
GO:0030529	ribonucleoprotein complex
GO:0048471	perinuclear region of cytoplasm

Orthologs

Species

Mus musculus

Bos taurus

Gene ID

Gene Order

ENSMUSG00000030189

View Gene Order

ENSBTAG00000009663

Not yet available

Pathways

NETPATH

REACTOME

KEGG

hsa04530

Tight junction pathway

INOH

PID NCI

Cross-References

SwissProt

P16989

TrEMBL

A0A024RAV4

UniProt Splice Variant

Entrez Gene

8531

UniGene

Hs.221889 Hs.633799

RefSeq

NM_001145426 NM_003651

HUGO

HGNC:2428

OMIM

603437

CCDS

CCDS44831 CCDS8630

HPRD

10347

IMGT

EMBL

AK314846 BC008801 BC015564 BC015913 BC021926 CH471094 L29064 L29065 L29066 L29067 L29068 L29069 L29070 L29071 M24069 X72712 X95325

GenPept

AAA35749 AAA79243 AAH08801 AAH15564 AAH15913 AAH21926 BAG37363 CAA51261 CAA64631 EAW96201 EAW96203 EAW96204

RNA Seq Atlas

8531