Version 5.4
Homo sapiens Gene: APOBEC1
Summary
InnateDB Gene IDBG-16344.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol APOBEC1
Gene Name apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Synonyms APOBEC-1; BEDP; CDAR1; HEPR
Species Homo sapiens
Ensembl Gene ENSG00000111701
Encoded Proteins
IDBP-16346
apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
IDBP-603883
apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a member of the cytidine deaminase enzyme family. The encoded protein forms a multiple-protein editing holoenzyme with APOBEC1 complementation factor (ACF) and APOBEC1 stimulating protein (ASP). This holoenzyme is involved in the editing of C-to-U nucleotide bases in apolipoprotein B and neurofibromatosis-1 mRNAs. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 12:7649400-7665903
Strand Reverse strand
Band p13.31
Transcripts
ENST00000229304 ENSP00000229304
ENST00000467171 ENSP00000436415
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 9 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 9 [view]
Protein-Protein 9 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0003824 catalytic activity
GO:0004126 cytidine deaminase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0017091 AU-rich element binding
Biological Process
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0006629 lipid metabolic process
GO:0006970 response to osmotic stress
GO:0009972 cytidine deamination
GO:0010043 response to zinc ion
GO:0010332 response to gamma radiation
GO:0010467 gene expression
GO:0016554 cytidine to uridine editing
GO:0016556 mRNA modification
GO:0032869 cellular response to insulin stimulus
GO:0042127 regulation of cell proliferation
GO:0042157 lipoprotein metabolic process
GO:0042158 lipoprotein biosynthetic process
GO:0042493 response to drug
GO:0042953 lipoprotein transport
GO:0045471 response to ethanol
GO:0048255 mRNA stabilization
GO:0051592 response to calcium ion
GO:0051607 defense response to virus
GO:0080111 DNA demethylation
GO:0090310 negative regulation of methylation-dependent chromatin silencing
Cellular Component
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000040613
View Gene Order
ENSBTAG00000014683
Not yet available
Pathways
NETPATH
REACTOME
REACT_1390
Formation of the Editosome pathway
REACT_167
mRNA Editing: C to U Conversion pathway
REACT_1757
mRNA Editing pathway
REACT_71
Gene Expression pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene 339
UniGene Hs.560
RefSeq XM_005253356 NM_001644 XM_005253355
HUGO HGNC:604
OMIM 600130
CCDS CCDS8579
HPRD 02531
IMGT
EMBL
GenPept
RNA Seq Atlas 339

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca