Bos taurus Gene: SDCBP | |||||||||||||||||
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Summary | |||||||||||||||||
InnateDB Gene | IDBG-644487.3 | ||||||||||||||||
Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||||||||||||
Gene Symbol | SDCBP | ||||||||||||||||
Gene Name | syntenin-1 | ||||||||||||||||
Synonyms | |||||||||||||||||
Species | Bos taurus | ||||||||||||||||
Ensembl Gene | ENSBTAG00000019910 | ||||||||||||||||
Encoded Proteins |
syntenin-1
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Protein Structure | |||||||||||||||||
Useful resources | Stemformatics EHFPI ImmGen | ||||||||||||||||
Entrez Gene | |||||||||||||||||
Summary |
This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000137575:
The protein encoded by this gene was initially identified as a molecule linking syndecan-mediated signaling to the cytoskeleton. The syntenin protein contains tandemly repeated PDZ domains that bind the cytoplasmic, C-terminal domains of a variety of transmembrane proteins. This protein may also affect cytoskeletal-membrane organization, cell adhesion, protein trafficking, and the activation of transcription factors. The protein is primarily localized to membrane-associated adherens junctions and focal adhesions but is also found at the endoplasmic reticulum and nucleus. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008] |
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Gene Information | |||||||||||||||||
Type | Protein coding | ||||||||||||||||
Genomic Location | Chromosome 14:26412824-26447192 | ||||||||||||||||
Strand | Forward strand | ||||||||||||||||
Band | |||||||||||||||||
Transcripts |
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Interactions | |||||||||||||||||
Number of Interactions |
This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 25 interaction(s) predicted by orthology.
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Gene Ontology | |||||||||||||||||
Molecular Function |
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Biological Process |
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Cellular Component |
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Orthologs | |||||||||||||||||
Species
Homo sapiens
Mus musculus
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Gene ID
Gene Order
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Pathway Predictions based on Human Orthology Data | |||||||||||||||||
NETPATH |
EGFR1 pathway
TCR pathway
IL5 pathway
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REACTOME |
Neurofascin interactions pathway
L1CAM interactions pathway
Developmental Biology pathway
Axon guidance pathway
Ephrin signaling pathway
EPH-Ephrin signaling pathway
EPH-Ephrin signaling pathway
Axon guidance pathway
L1CAM interactions pathway
Developmental Biology pathway
Ephrin signaling pathway
Neurofascin interactions pathway
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KEGG | |||||||||||||||||
INOH | |||||||||||||||||
PID NCI |
Syndecan-2-mediated signaling events
Syndecan-4-mediated signaling events
Syndecan-1-mediated signaling events
IL5-mediated signaling events
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Cross-References | |||||||||||||||||
SwissProt | |||||||||||||||||
TrEMBL | Q3SZA6 | ||||||||||||||||
UniProt Splice Variant | |||||||||||||||||
Entrez Gene | 510979 | ||||||||||||||||
UniGene | Bt.62010 | ||||||||||||||||
RefSeq | NM_001075483 XM_005215436 XM_005215437 XM_005215438 XM_005215439 XM_005215440 | ||||||||||||||||
HUGO | |||||||||||||||||
OMIM | |||||||||||||||||
CCDS | |||||||||||||||||
HPRD | |||||||||||||||||
IMGT | |||||||||||||||||
EMBL | BC103011 DAAA02038371 | ||||||||||||||||
GenPept | AAI03012 | ||||||||||||||||
RNA Seq Atlas | 510979 | ||||||||||||||||