Version 5.4
Mus musculus Gene: Kdm4b
Summary
InnateDB Gene IDBG-192051.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Kdm4b
Gene Name lysine (K)-specific demethylase 4B
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000024201
Encoded Proteins
IDBP-192053
lysine (K)-specific demethylase 4B
IDBP-192055
lysine (K)-specific demethylase 4B
IDBP-531865
lysine (K)-specific demethylase 4B
IDBP-531881
lysine (K)-specific demethylase 4B
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000127663:
Gene Information
Type Protein coding
Genomic Location Chromosome 17:56326062-56402870
Strand Forward strand
Band D
Transcripts
ENSMUST00000025036 ENSMUSP00000025036
ENSMUST00000086835 ENSMUSP00000084045
ENSMUST00000139679 ENSMUSP00000118089
ENSMUST00000132363
ENSMUST00000147489
ENSMUST00000141507 ENSMUSP00000116789
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 6 experimentally validated interaction(s) in this database.
They are also associated with 12 interaction(s) predicted by orthology.
Experimentally validated
Total 6 [view]
Protein-Protein 6 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 12 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0016568 chromatin modification
GO:0055114 oxidation-reduction process
Cellular Component
GO:0005634 nucleus
GO:0005925 focal adhesion
GO:0030054 cell junction
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000127663
View Gene Order
ENSBTAG00000015487
Not yet available
Pathways
NETPATH
REACTOME
REACT_218274
Chromatin organization pathway
REACT_256030
HDMs demethylate histones pathway
REACT_202766
Chromatin modifying enzymes pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_228178
HDMs demethylate histones pathway
REACT_172623
Chromatin organization pathway
REACT_172633
Chromatin modifying enzymes pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL B0V2M7
UniProt Splice Variant
Entrez Gene 193796
UniGene Mm.45047
RefSeq NM_172132 XM_006523893 XM_006523894 XM_006523895 XM_006523896 XM_006523898
OMIM
CCDS CCDS28904
HPRD
IMGT
MGI ID MGI:2442355
MGI Symbol Kdm4b
EMBL AC026385 CT009637
GenPept
RNA Seq Atlas 193796

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca