Downloads

All interactions in InnateDB can be downloaded in Proteomics Standards Initiative (PSI) Molecular Interaction 2.5 XML format (PSI MI 2.5)

Please note these files are zipped for downloading but are extremely large when uncompressed.

BIOGRID Data in InnateDB (2009-11-09)
MINT Data in InnateDB (2009-11-09)
INTACT Data in InnateDB (2009-11-09)
DIP Data in InnateDB (2009-11-09)
BIND Data in InnateDB (2009-11-09)
Curated InnateDB Data (2010-03-09)

Alternatively, the results of specific searches (made through the search page) can be downloaded in several convenient formats (see below).

Batch download of all interaction data is only available in the PSI-2.5 XML format which is the international standard for this type of complex data.

Search interactions here.

Search genes or proteins here.

Search interactions or molecules by pathway here.

Upload and analyze your own gene list here.

Gene and protein data can be downloaded in:

Tab-delimited (TAB), Microsoft Excel (MS Excel) and Comma-separated value (CSV) formats.

Interaction data (resulting from specific searches) can be downloaded in the following formats:

Tab-delimited (TAB), Microsoft Excel (MS Excel), Comma-separated value (CSV), Simple interaction format (SIF) and Proteomics Standards Initiative (PSI) Molecular Interaction 2.5 XML format (PSI MI 2.5).